This is data from a long-term monitoring project which utilized sonic tags to follow aggregations of red king crab in Womens Bay near Kodiak Alaska. The database consists of four major tables: Sonic tags: An inventory of all tags used recording crab size and sex dates of tag release and recovery, and if possible the reason for tag loss. Locations: Field locations in latitude, longitude, and depth for sonic tags, generally acquired on a weekly basis. Dive summary:A summary of dive observations on sonic tagged crab aggregations to document crab behavior and habitat use. Crab measurements:Measurements of crab carapace lengths, sex, and shell conditions of diver-collected crab from crab aggregations associated with tagged crab.

This data is from an experiment designed to test the viability of using hatchery reared crab to supplement wild stocks and to determine the optimal density for future releases. Crab were released by divers into 5 x 5 m quadrats marked with ground line at three densities: 25, 50, and 75 m-2. Researchers monitored the crab density inside the plots, in order to estimate survival, as well as outside the plots, to estimate crab movement. In addition, they determined predator densities and performed tethering experiments on red king crab to see if predator density or predation risk differed among the density treatments.

These are the data from a laboratory experiment in which DNA content was removed from blood smears and extracted. The blood smears were either stained with Giemsa-stain or remained un-stained. Some of the un-stained smears were coverslipped. Host and parasitic DNA was amplified using conventional PCR.

Diel epipelagic sampling for juvenile Pacific salmon (Oncorhynchus spp.), rockfish (Sebastes spp.), sablefish (Anoplopoma fimbria), and associated species was conducted in order to identify factors that may affect year-class success of these commercially important species. Sampling occurred in offshore marine habitats of the coastal northeast Pacific Ocean from 10-20 August 2005 and was conducted with a surface trawl fishing the upper 20 m of the water column along transects up to78 km offshore near 58 N. Three habitats were sampled along each transect over a 24-hr period: the continental shelf (<200 m depth), the continental slope (400-750 m depth), and the abyss (>2,000 m depth). A total of 38,747 fish and squid representing 24 species were sampled in 56 trawl hauls. Of the targeted juvenile fish species, a total of 587 salmon, 11 rockfish, and 70 sablefish were captured. Sampling during day (1500-1900) and night (2200-0200) periods indicated that biomass of fish and squid was 2-4 times higher at night at (each?)all habitat types pooled across transects. No distinct patterns between day or night occurrence were noted for juvenile pink salmon (O. gorbuscha), chum salmon (O. keta), sockeye salmon (O. nerka), or coho salmon (O. kisutch), however, juvenile Chinook salmon (O. tshawytscha) were encountered only at night. Catches of juvenile rockfish and juvenile sablefish were quite low in this study, and larger sample sizes of these fish are needed to adequately determine their diel distribution. Diel differences were apparent with forage species such as Pacific herring (Clupea pallasi), capelin (Mallotus villosus), and eulachon (Thaleichthys pacificus) that were almost exclusively sampled at night. The offshore distribution patterns of target species were distinctly different, with the most common occurrences of juvenile salmon over continental shelf habitats, juvenile sablefish over continental shelf and slope habitats, and juvenile rockfish over slope and abyss habitats. Pacific herring, capelin, eulachon, and Pacific sardines (Sardinops sagax) were found over continental shelf habitats, whereas small squid and myctophids occurred primarily at slope and abyssal habitats. The greatest overall catch biomass was of gelatinous species (jellyfish), which was consistently higher than that of all fish and squid combined, usually by an order of magnitude. Individual fish or squid species with highest average weight per haul were pomfret (Brama japonica), adult coho salmon, Humboldt squid (Dosidicus gigas), and blue sharks (Prionace glauca). The occurrence of the latter two warm-water species and Pacific sardines were of interest because this study occurred during an anomalously warm year and the capture of Pacific sardines and Humboldt squid represent northern range extensions for these species. Stomach content analysis of potential predator species of the target species showed that only adult coho salmon were predating on juvenile salmon and sablefish, and only pomfret were predating on juvenile rockfish. Further sampling of the target species is needed in these habitats during more normal environmental conditions to validate these observations.

This dataset is from a laboratory study that investigated the effect of temperature and tissue type on fatty acid signatures of Pacific cod and walleye pollock.

In November, 2006, Oceanographic observations were initiated during the resupply cruises to the Little Port Walter Research Station on lower Baranof Island, Southeast Alaska. Six sampling stations were selected starting at mid channel, Stephans Passage near Snettisham Inlet then, near the intersection of Stephans Passage and Fredrick Sound by Brothers Islands, then, near the intersection of Fredrick Sound and Chatham Strait off of Kingsmill Point and then three stations across lower Chatham Strait just north of the latitude of Little Port Walter. An SBE19plus conductivity, temperature and depth recorder was used to take water samples at a speed of approximately one meter per second from the surface to a depth of 250 meters. These observations are intended to be part of the Southeast Alaska Ocean Observing System (SEAOOS). Data are stored as CNV files, HEX files and jpg files on Frank Throwers computer.

The data from this study, describes embryo development in Golden king crab, Lithodes aequispinus. Six female multiparous golden king crab were captured from the Aleutian Islands, Alaska, and mated in the laboratory. Their embryos were photographed and staged on average once every 9 days throughout embryogenesis.

The Southeast Alaska Coastal Monitoring (SECM) project in Alaska was initiated in 1997 by the Auke Bay Laboratory, National Marine Fisheries Service, to study the habitat use and early marine ecology of juvenile (age-0) Pacific salmon (Oncorhynchus spp.) and associated epipelagic ichthyofauna. This research has been conducted to meet several needs identified in the National Oceanic and Atmospheric Administration (NOAA) Fisheries 2006-2011 Strategic Plan, the North Pacific Anadromous Fisheries Commission (NPAFC) 20062010 Science Plan, and the Gulf of Alaska Global Ocean Ecosystem Dynamics (GLOBEC) Program.

A primary goal of the 2006-2011 NOAA Fisheries Strategic Plan is to Protect, Restore, and Manage the Use of Coastal and Ocean Resources Through an Ecosystem Approach to Management. SECM research addresses the five fundamental activities identified under this goal, which include: Monitor and observe the land, sea, atmosphere. Understand and describe how natural systems work together, Assess and predict the changes in natural systems, Engage, advise, and inform individuals, partners, communities, and industries, and, Manage coastal and ocean resources SECM research emphasizes long-term monitoring of coastal marine habitats used by juvenile salmon and associated epipelagic fishes, to understand how environmental variation affects the sustainability of these marine resources in an ecological context.

The study of juvenile anadromous stocks of salmon in ocean ecosystems is an important component of the NPAFC 2006-2010 Science Plan. This component recommends studies directed at understanding: seasonal distribution and migration route/timing of juvenile salmon; hydrological characteristics, primary production, and prey resources in the habitats; trophic linkages, growth rates and predation rates of juvenile salmon; and population size, survival rate and survival mechanism of juvenile salmon. SECM research focuses on each of these elements of this component. In particular, SECM examines the relationships among habitat use, marine growth, hatchery and wild stock interactions, year-class strength, and ocean carrying capacity of key juvenile salmon stocks in the Eastern Pacific rim.

Research under the GLOBEC program incorporates basin-scale studies to determine how plankton productivity and the carrying capacity for high-trophic level, pelagic carnivores in the North Pacific Ocean change in response to climate variations, and incorporates regional-scale ecosystem studies to compare how variations in ocean climate affect species dominance and fish populations in the coastal margins of the Pacific Rim. SECM research addresses the regional-scale component of the GLOBEC program by 1) collecting biological data on juvenile Pacific salmon and ecologically related fish species from surface rope trawl samples, 2) monitoring physical and biological oceanographic indices at sampling stations in marine habitats, and 3) conducting process studies focusing on bioenergetics, prey fields, and trophic relationships of juvenile salmon and associated fishes.

Colonies of the gorgonian coral Calcigorgia spiculifera were tagged at three sites in Southeast Alaska, Little Port Walter, Tenakee Inlet, and Kelp Bay. The corals were videoed in situ. Growth of individual coral branches was determined from video observations. Average annual branch growth was greatest at Kelp Bay (8.8 mm) and lowest at Tenakee Inlet (3.0 mm). Branch growth was positively correlated with colony size.

Polar Ecosystems Program research projects focus primarily on abundance, trends, distribution, health and condition, and foraging behavior of phocids (harbor, bearded, ringed, spotted, and ribbon seals) in Alaska. This database represents a collection of morphometrics obtained from all of these species across a variety of research projects. Morphometric data were collected from seals that were captured and sampled in the north Pacific, Bering and Chukchi Seas, in 2004-2012, 2014, 2015. There are also morphometric data from ribbon, spotted, and bearded seals that were collected during a research cruise in 1991. Data collected include lengths, girths, mass, and blubber thickness.