Pacific salmon (Oncorhynchus spp.) runs in rivers that flow into the eastern Bering Sea have been inconsistent and at times very weak. Low returns of chinook (O. tshawytscha) and chum (O. keta) salmon to the Yukon River, Kuskokwim River, and Norton Sound areas of Alaska prompted the state of Alaska to restrict commercial and subsistence fisheries during 2000 and declare the region a fisheries disaster area. Weak salmon returns to these river systems follow several years of low sockeye (O. nerka) salmon returns to Bristol Bay, which was declared a fisheries disaster region during 1998 by both the State of Alaska and the U.S. Department of Commerce. Causes of the poor salmon returns to these river systems are not known however, the regional-scale decline of these stocks indicates that the marine environment may play a critical role. Ocean conditions, particularly in the first few months after the salmon leave fresh water, are known to significantly affect salmon survival (Holtby et al. 1990; Friedland et al. 1996; Beamish and Mahnken 2001). Mechanisms affecting marine survival of the eastern Bering Sea salmon stocks are unknown, principally due to the lack of marine life history information on western Alaska salmon. To improve understanding of the marine life-history stage of salmon in the Bering Sea, the North Pacific Anadromous Fish Commission (NPAFC) began an internationally coordinated research program on salmon in the Bering Sea called the Bering-Aleutian Salmon International Survey (BASIS) (NPAFC 2001). As part of BASIS, scientists from the National Marine Fisheries Service (NMFS), Ocean Carrying Capacity (OCC) program conducted a fall survey on the eastern Bering Sea shelf to provide key ecological data for eastern Bering Sea salmon stocks during their juvenile life-history stage. The goal of the OCC/BASIS salmon research cruise was to understand mechanisms underlying the effects of environment on distribution, migration, and growth of juvenile salmon on the eastern Bering Sea shelf. Primary objectives of BASIS include: 1) to determine the extent of offshore migrations of juvenile salmon from rivers draining into the eastern Bering Sea, 2) to describe the physical environment of the eastern and northeastern Bering Sea shelf occupied by juvenile salmon, and 3) to collect biological information on other ecologically important species. Summaries of previous Bering Sea juvenile salmon research cruises can be found in Farley et al. (1999, 2000, 2001, 2002, 2004, 2005).

The Southeast Alaska Coastal Monitoring (SECM) project in Alaska was initiated in 1997 by the Auke Bay Laboratory, National Marine Fisheries Service, to study the habitat use and early marine ecology of juvenile (age-0) Pacific salmon (Oncorhynchus spp.) and associated epipelagic ichthyofauna. This research has been conducted to meet several needs identified in the National Oceanic and Atmospheric Administration (NOAA) Fisheries 2006-2011 Strategic Plan, the North Pacific Anadromous Fisheries Commission (NPAFC) 20062010 Science Plan, and the Gulf of Alaska Global Ocean Ecosystem Dynamics (GLOBEC) Program.

A primary goal of the 2006-2011 NOAA Fisheries Strategic Plan is to Protect, Restore, and Manage the Use of Coastal and Ocean Resources Through an Ecosystem Approach to Management. SECM research addresses the five fundamental activities identified under this goal, which include: Monitor and observe the land, sea, atmosphere. Understand and describe how natural systems work together, Assess and predict the changes in natural systems, Engage, advise, and inform individuals, partners, communities, and industries, and, Manage coastal and ocean resources SECM research emphasizes long-term monitoring of coastal marine habitats used by juvenile salmon and associated epipelagic fishes, to understand how environmental variation affects the sustainability of these marine resources in an ecological context.

The study of juvenile anadromous stocks of salmon in ocean ecosystems is an important component of the NPAFC 2006-2010 Science Plan. This component recommends studies directed at understanding: seasonal distribution and migration route/timing of juvenile salmon; hydrological characteristics, primary production, and prey resources in the habitats; trophic linkages, growth rates and predation rates of juvenile salmon; and population size, survival rate and survival mechanism of juvenile salmon. SECM research focuses on each of these elements of this component. In particular, SECM examines the relationships among habitat use, marine growth, hatchery and wild stock interactions, year-class strength, and ocean carrying capacity of key juvenile salmon stocks in the Eastern Pacific rim.

Research under the GLOBEC program incorporates basin-scale studies to determine how plankton productivity and the carrying capacity for high-trophic level, pelagic carnivores in the North Pacific Ocean change in response to climate variations, and incorporates regional-scale ecosystem studies to compare how variations in ocean climate affect species dominance and fish populations in the coastal margins of the Pacific Rim. SECM research addresses the regional-scale component of the GLOBEC program by 1) collecting biological data on juvenile Pacific salmon and ecologically related fish species from surface rope trawl samples, 2) monitoring physical and biological oceanographic indices at sampling stations in marine habitats, and 3) conducting process studies focusing on bioenergetics, prey fields, and trophic relationships of juvenile salmon and associated fishes.

The web-posted Alaska Shore Station Database is a compilation of hundreds of intertidal sites that were visited and evaluated throughout the coastal waters of Alaska. At each station attempts are made to document all observed species and their assemblages, geomorphic features, measurements of beach length and slope, and gather photographic examples. This online database has been designed to integrate with the spatially explicit, Alaska ShoreZone web enabled GIS platform. The end result is a user friendly and accessible version of the Shore Station database with a queryable display of station locations, downloadable species lists and photos.

Data is available from annual bottom longline surveys conducted cooperatively by Japan (1979-1994) and the U.S. National Marine Fisheries Service, Alaska Fisheries Science Center (1988-present). Starting in 1988, the U.S. started conducting the survey, creating overlap between the two countries between1988-1994. Since 1994, the U.S. has conducted the survey independently. Stations are spaced systematically (~20-30 km apart) along the slope from the eastern Gulf of Alaska west to the Aleutian Islands and north into the eastern Bering Sea. At each station, depths from ~150-1000 meters are sampled. Each year the captain attempts to set the gear along the same path. The same stations are sampled each year except in the Aleutian Islands and the Bering Sea, which are sampled every other year at the beginning of the survey (last week of May-early June). Since 1995, in odd years the Bering Sea stations are sampled and in even years the Aleutian Islands are sampled. The status of each hook is recorded. Lengths are taken from major species including, sablefish, giant grenadier, Pacific grenadier, Greenland turbot, arrowtooth flounder, Pacific cod, shortspine thornyhead, and all rockfish caught.

Two-day experiments have been conducted as a separate leg on the Alaska Fisheries Science Centers longline survey since 1998. Experiments are conducted usually in the vicinity of Yakutat, Alaska in late July of each year. The majority of projects are longline gear related and include hook spacing experiments, hand versus auto bait gear comparisons, and bait type comparisons. Rockfish genetics and sperm whale depredation studies have also been conducted. Data collected during the two-day experiments include 100% hook census of catch, lengths of major species caught, and data collection procedures relevant to each individual study. The data are housed in a Microsoft Access database and maintained by the Marine Ecology and Stock Assessment group at the Auke Bay Laboratories.

The Nutritional Ecology Laboratory maintains a database containing all of the biochemical data we collect. The database includes seasonal information regarding size, age, location, date, developmental stage, and maturity status of all the specimens we have examined. Samples range from phytoplankton to whales and seals. Depending on the objectives of specific studies, these data can be matched to measures of energy content, proximate, lipid class, and fatty acid composition.

The scientific objective of the Gulf of Alaska Survey (GOA Survey) is to assess Young of the Year (YOY) groundfish, salmon, plankton, and oceanographic conditions across the coastal, shelf, slope, and offshore waters of the GOA and to provide information on species distribution, ecosystem structure, and marine productivity in response to changes in season, region, and climate. Specific objectives are to 1) observe epi-pelagic fish communities by sampling with a rope trawl towed at the surface; 2) collect electronic oceanographic data including CTD (Conductivity-temperature-depth) vertical profiles of temperature, salinity, light transmission, chlorophyll a fluorescence, and photosynthetic available radiation (PAR); and 3) collect biological oceanographic samples (zooplankton and water) by oblique bongo tows and water sampling.

The project objectives were to assess potential salmon predation impact on juvenile salmon and herring by: (1) comparing diets of adult pink salmon during their homing migrations using samples taken from surface trawls in SEAK straits and purse seines in SEAK and PWS; (2) contrasting predation incidence of these abundant pink salmon with the less abundant, more piscivorous adult coho and immature (age-1+) Chinook salmon in SEAK straits; and (3) examining potential climate mechanisms that could influence predator-prey match-mismatch by altering life history patterns of growth, migration timing, or stock-specific characteristics.

Information on the distribution and relative abundance of nearshore fishes from beach seine hauls in Alaska is now available to managers as an online Fish Atlas. The atlas is dynamic and will continually be updated as more data becomes available. Presently, the atlas includes distribution and habitat use information for nearshore fishes in southeastern Alaska, Prince William Sound, the Aleutian Islands, and the Arctic. This online database has been designed to integrate with the spatially explicit, Alaska ShoreZone web enabled GIS platform. Further details about the database design can be found on Auke Bay Laboratories public website.